, March 27, 2019 10:34:28 AM
To: Iglesias Gonzalez, Eugenio; Freesurfer support list
Subject: Re: [Freesurfer] Conversion of thalamic nuclei labels
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them as
ROIs?
Da: freesurfer-boun...@nmr.mgh.harvard.edu
per conto di Sanchez, Juan (NYSPI)
Inviato: mercoledì 27 marzo 2019 15:17:41
A: Iglesias Gonzalez, Eugenio; Freesurfer support list
Oggetto: Re: [Freesurfer] Conversion of thalamic nuclei l
From: Sanchez, Juan (NYSPI)
Sent: Wednesday, March 27, 2019 10:15:18 AM
To: Iglesias Gonzalez, Eugenio; Freesurfer support list
Subject: Re: [Freesurfer] Conversion of thalamic nuclei labels
We have run the thalamic and amyhip segmentation scripts on HCP data and were
convert the segmented
, Eugenio; Freesurfer support list
Subject: Re: [Freesurfer] Conversion of thalamic nuclei labels
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Hi Eugenio,
Yes, when I
ifferent subnuclei in SPM/Conn.
Best,
Valentina
Da: Iglesias Gonzalez, Eugenio
Inviato: mercoledì 27 marzo 2019 14:55:00
A: Freesurfer support list
Cc: Valentina Mancini
Oggetto: Re: [Freesurfer] Conversion of thalamic nuclei labels
Hi Valentina,
I've ne
visualize
the different subnuclei in SPM/Conn.
Best,
Valentina
Da: Iglesias Gonzalez, Eugenio
Inviato: mercoledì 27 marzo 2019 14:55:00
A: Freesurfer support list
Cc: Valentina Mancini
Oggetto: Re: [Freesurfer] Conversion of thalamic nuclei labels
Hi Valent
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Hi Valentina,
I've never used FSLeyes but I suspect you'd need a lookup table to visualize
the nuclei properly. Do you see different pixel values when you move your
cursor over the different areas of the thalamus in FSLeyes?
Cheers,
/Eugenio
--
Juan
and your full command line for conversion?
On Wed, 27 Mar 2019, Iglesias
Gonzalez, Eugenio wrote:
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Dear Valentina
Resolution should not be affected by MRI_convert. Can you please send us an
example/screen capture?
Cheers
Eugenio
Sent from mobile,
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Dear Valentina
Resolution should not be affected by MRI_convert. Can you please send us an
example/screen capture?
Cheers
Eugenio
Sent from mobile, please excuse brevity and typos
From: Valentina Mancini
Sent: Wednes
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Dear all,
I ran the thalamic segmentation implemented in FreeSurfer and, according to
visual inspection, I got nice results with a good delineation of all the nuclei.
Then, I wanted to use the label of the thalamic nuclei to select an ROI in the
MG
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