@nmr.mgh.harvard.edu
> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] De la part de Bruce Fischl
> Envoyé : 12 December 2015 16:45
> À : Freesurfer support list
> Objet : Re: [Freesurfer] configure overlay display in tksurfer by keyboard
> inputs
>
> Hi David
>
> tksurfer
igine-
De : freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] De la part de Bruce Fischl
Envoyé : 12 December 2015 16:45
À : Freesurfer support list
Objet : Re: [Freesurfer] configure overlay display in tksurfer by keyboard
inputs
Hi David
tksurfer has
to v6-beta.
Thanks,
David
-Message d'origine-
De : freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] De la part de Bruce Fischl
Envoyé : 15 August 2015 21:12
À : Freesurfer support list
Objet : Re: [Freesurfer] configure overlay display in tksur
freesurfer-boun...@nmr.mgh.harvard.edu] De la part de Bruce Fischl
Envoyé : 15 August 2015 21:12
À : Freesurfer support list
Objet : Re: [Freesurfer] configure overlay display in tksurfer by keyboard
inputs
Hi Lars
can you give more details? What prevents you from entering values? Do you get
any errors when
Hi Lars
can you give more details? What prevents you from entering values? Do you
get any errors when tksurfer loads?
cheers
Bruce
On Sat,
15 Aug 2015, Lars M. Rimol wrote:
>
> Hi all,
>
> I have installed FS 5.3 on an Ubuntu 14.04 system and find that I am unable
> to set threshold
> valu
Hi all,
I have installed FS 5.3 on an Ubuntu 14.04 system and find that I am unable
to set threshold values in the edit boxes in the "configure overlay"
display in tksurfer. Does anybody know how to fix this (without specifying
the threshold on the command line each time)?
Thank you!
yours,
There is no way to set that up in tksurfer (everything above max is
going to be yellow or cyan). But you can threshold the input map such
that values above max are set to 0, then they will show up transparent.
Use mri_binarize to create a mask with voxels between min and max set to
1. Then use
Hi:
I mean transparent...
Sincerely,
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Las Condes Clinic
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel: 56-9-97771785
www.clc.cl
El 09-07-2010 14:25, Douglas N Greve escribi
When you say "in gray" do you mean transparent (so you can see the gray
scale curvature pattern) or do you mean you want the activation to be
opaque and gray instead of colored?
Gonzalo Rojas Costa wrote:
> Hi:
>
> How can I display an overlay in such a manner that only values between "min"
>
Hi:
How can I display an overlay in such a manner that only values between "min"
and "max" are displayed in a color palette, and values less than "min" and
values greater than "max" are displayed in gray ?...
Sincerely,
Gonzalo Rojas Costa
___
F
picture much more descriptive to look
at. Thanks for your help!
Regards,
Jeff Sadino
> Date: Mon, 2 Mar 2009 17:28:08 -0500
> From: fis...@nmr.mgh.harvard.edu
> To: jsad...@hotmail.com
> CC: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] Configure Overlay Display for &g
Hi Jeff,
have you tried setting the offset in the configure functional overlay
panel to be around the middle of your range (-1.5 or so I guess)?
cheers,
Bruce
On Mon, 2
Mar 2009, Jeff Sadino wrote:
Hello Surfers,
I have an overlay file with values ranging from -4.63 (n=138477) to 1.34
(n
Hello Surfers,
I have an overlay file with values ranging from -4.63 (n=138477) to 1.34
(n=25365). I would like to display this data with more than the two colors of
the Green/Red, Heat, Blue/Red, or complex Color Scales in the Configure Overlay
dialog. So far, no luck, even with toying with
did you change it, or doesn't it match the first time you bring it up? Tk
has this somewhat strange property where you have to hit the return key
for a change to really take effect
On Thu, 28 Aug 2008, Nicola Hobbs wrote:
Hi all,
We've noticed that the min threshold value in the configure ove
Hi all,
We've noticed that the min threshold value in the configure overlay
display toolbar doesn't correpond to the value displayed on the scale
bar. Could someone explain this difference please?
Thanks for your help.
Nicola
--
Nicola Hobbs
Dementia Research Centre
National Hospital for
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