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Subject: Re: [Freesurfer] Computing SA from an older FS version
Dear Experts,
With your help, I recalculated the surface area, now using the pial surface
instead of the wm/gm boundary. I am, however, somewhat surprised by the
discrepancy between my previous and current results, because the cor
...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
Sent: maandag 13 juli 2015 14:46
To: Freesurfer support list
Subject: Re: [Freesurfer] Computing SA from an older FS version
Hi Niels
the matlab commands should be:
>> [v, M,mr] = load_mgh(&
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
Sent: maandag 13 juli 2015 14:46
To: Freesurfer support list
Subject: Re: [Freesurfer] Computing SA from an older FS version
Hi Niels
the matlab commands should be:
>> [v, M,mr] = load_mgh('wm.mgz') ;
>&g
5 14:46
To: Freesurfer support list
Subject: Re: [Freesurfer] Computing SA from an older FS version
Hi Niels
the matlab commands should be:
>> [v, M,mr] = load_mgh('wm.mgz') ;
>> save_mgh(v, 'wm.mgz', M,mr);
cheers
Bruce
On Mon, 13 Jul 2015,
vard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
Sent: zondag 12 juli 2015 16:44
To: Freesurfer support list
Subject: Re: [Freesurfer] Computing SA from an older FS version
Hi Niels
is that the entire error? Does it not say what volume produces the error?
Th
wrong?
Thanks again!
Cheers,
Niels
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
Sent: zondag 12 juli 2015 16:44
To: Freesurfer support list
Subject: Re: [Freesurfer] Computing SA from an
Hi Niels
is that the entire error? Does it not say what volume produces the error?
That was a bug we had briefly some time ago, but I didn't think it made it
into anything we released. If you can track down which volume is causing
this problem you can just load it into matlab with load_mgh.m
Dear FreeSurfer-experts,
Unfortunately, nobody replied to my question so this is a repost (see the
original question below). Could anybody please give some advise on how to
proceed? The deadline for the revisions is drawing near, so any help is greatly
appreciated!
Best wishes,
Niels
Dear FreeSurfer-experts,
In 2012 I used a (currently outdated) version of FreeSurfer to analyze my data
on an external server and wrote an article about our findings. Now the
reviewers asked us to recalculate surface area using the pial surface, instead
of the WM/GM boundary. I found the comman
