Re: [Freesurfer] Compute cortical thickness within VOI

2018-07-02 Thread Alshikho, Mohamad J.
Dr Bruce, thank you so much! -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: Monday, July 2, 2018 9:59 AM To: Freesurfer support list Subject: Re: [Freesurfer] Compute cortical thickness

Re: [Freesurfer] Compute cortical thickness within VOI

2018-07-02 Thread Bruce Fischl
Hi Mohamed yes, that woud work. Create a label file on the surface from your VOI and give it to mris_anatomical_stats with the -l flag cheers Bruce On Mon, 2 Jul 2018, Alshikho, Mohamad J. wrote: Dear FreeSurfer experts, I have MRS volume of interest (VOI) was placed in the motor corte

[Freesurfer] Compute cortical thickness within VOI

2018-07-02 Thread Alshikho, Mohamad J.
Dear FreeSurfer experts, I have MRS volume of interest (VOI) was placed in the motor cortex during MRS data acquisition. In order to compute the gray and white matter volume within the VOI, I synthesized this VOI using "mri_volsynth". Then I registered it to T1 Freesurfer space using "spmregiste