Re: [Freesurfer] Compute Cortical Thickness for grouped ROIs

2025-02-12 Thread Douglas N. Greve
You can merge them together with a combination of mris_annotation2label to split the annotation into different labels, then merge the labels you want with mri_mergelabels, then use mris_anatomical_stats to compute a stats file. Alternatively, and probably easier, is just to compute an average o

[Freesurfer] Compute Cortical Thickness for grouped ROIs

2025-02-05 Thread Rohitkumar DATCHANAMOURTY
External Email - Use Caution Hello, I am working on obtaining cortical thickness values for customized groups of ROIs. Currently, I extract thickness values for the standard set of ROIs using the following command: aparcstats2table --subjects [SUBJECT_ID] --hemi lh --meas t