Re: [Freesurfer] Color scale for the probability maps

2009-06-08 Thread Bruce Fischl
I think for the pub it was 0-1, not 0-100. Can you generate that? On Mon, 8 Jun 2009, Eylem Kirlangic wrote: I can change the values min and max in the configuration window, this changes the threshold and apllies to the map. I can observe these changes on the map, the scale bar changes accord

Re: [Freesurfer] Color scale for the probability maps

2009-06-08 Thread Eylem Kirlangic
I can change the values min and max in the configuration window, this changes the threshold and apllies to the map. I can observe these changes on the map, the scale bar changes accordingly, too. But, as I said, it is not a percental (%) scale bar, rather takes -/+ max value (which is input in

Re: [Freesurfer] Color scale for the probability maps

2009-06-08 Thread Bruce Fischl
did you hit return when you typed in the 0/1 values? This is a tk thing - it won't take the values until you hit return. Then click apply and it should redraw with the new values On Mon, 8 Jun 2009, Eylem Kirlangic wrote: Hi Bruce, That's exactly what I do. The maps do look nice, but the colo

Re: [Freesurfer] Color scale for the probability maps

2009-06-08 Thread Eylem Kirlangic
Hi Bruce, That's exactly what I do. The maps do look nice, but the color scale bar does not. It is not a percentage scale, rather it takes a scale of -/+ max value (of course, a negative value does not exist on the probability map!!!). I think it is just about the options of the color scale b

Re: [Freesurfer] Color scale for the probability maps

2009-06-08 Thread Bruce Fischl
Hi Eylem, are you configuring it with the configure overlay window? If so, you should be able to enter 0 for the thresh and 1 for the max, and click "linear" to generate the same maps as the ones we published. You need to copy the label stats to an overlay first though (tools->label->copy labe

[Freesurfer] Color scale for the probability maps

2009-06-08 Thread Eylem Kirlangic
Hi, When I plot the probability maps, the color scale bar takes negative values too (e.g., setting the threshold min 0 max 0.5, you get a scale bar between -0.5 and +0.5). How can I change the color scale bar so that it shows percentages? Thanks! Eylem