[Freesurfer] Cluster summary table

2023-07-02 Thread Maria Czarnecka
External Email - Use Caution Dear Experts, I calculated a conjunction using "mri_concat". I have a beautiful map but I need a cluster summary table for it. How can I get that? Best, Maria Czarnecka ___ Freesurfer mailing list Freesurfer

Re: [Freesurfer] Cluster Summary

2014-02-05 Thread Douglas Greve
look in the QDEC output folder. in each contrast subfolder you'll see a "summary" file. This has most of the info you request. doug On 2/5/14 7:59 PM, Natasha Haris wrote: Hello Freesurfers, Is there any way to get a list of all the clusters (with information on their location, x/y/z verti

[Freesurfer] Cluster Summary

2014-02-05 Thread Natasha Haris
Hello Freesurfers, Is there any way to get a list of all the clusters (with information on their location, x/y/z vertices, t statistic etc) from QDEC? Thanks , Natasha ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harva

Re: [Freesurfer] cluster summary to MNI standard space

2009-05-04 Thread Douglas N Greve
This will take the mri_surfcluster annotation output and map it into a volume in MNI152 space. Each voxel will have an integer value indicating which cluster it belongs to. This is better than trying to work with the coordinates. Note you can also specify a label instead of an annotation. do

[Freesurfer] cluster summary to MNI standard space

2009-05-04 Thread Georg Homola
Hi, I'd like to extract %BOLD-change from clusters or highly activated voxels (first level fMRI data processed in FEAT, higher level done with mri_glmfit). Can you tell me what kind of space the cluster summary list created by mri_surfcluster refers to? Is it real Talairach space as TalX, TalY an