Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats

2013-10-08 Thread Tara Ann Miskovich
I see. Thank you so much for everything! Tara - Original Message - From: "Douglas N Greve" To: "Tara Ann Miskovich" Cc: freesurfer@nmr.mgh.harvard.edu Sent: Tuesday, October 8, 2013 2:42:36 PM Subject: Re: [Freesurfer] Cluster Annotation file and mris_anatomical_

Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats

2013-10-08 Thread Douglas N Greve
gt; - Original Message - > From: "Douglas N Greve" > To: "Tara Ann Miskovich" > Cc: freesurfer@nmr.mgh.harvard.edu > Sent: Tuesday, October 8, 2013 2:15:33 PM > Subject: Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats > > > OK,

Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats

2013-10-08 Thread Tara Ann Miskovich
uot;Douglas N Greve" > To: "Tara Ann Miskovich" > Cc: freesurfer@nmr.mgh.harvard.edu > Sent: Tuesday, October 8, 2013 1:57:35 PM > Subject: Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats > > > what version of FS are you using? > > On 10/08/2013

Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats

2013-10-08 Thread Tara Ann Miskovich
Thank you so much! Tara - Original Message - From: "Douglas N Greve" To: "Tara Ann Miskovich" Cc: freesurfer@nmr.mgh.harvard.edu Sent: Tuesday, October 8, 2013 2:15:33 PM Subject: Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats OK, the featur

Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats

2013-10-08 Thread Douglas N Greve
n Miskovich" > Cc: freesurfer@nmr.mgh.harvard.edu > Sent: Tuesday, October 8, 2013 1:57:35 PM > Subject: Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats > > > what version of FS are you using? > > On 10/08/2013 02:55 PM, Tara Ann Miskovich wrote: >>

Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats

2013-10-08 Thread Tara Ann Miskovich
version 5.0.0 - Original Message - From: "Douglas N Greve" To: "Tara Ann Miskovich" Cc: freesurfer@nmr.mgh.harvard.edu Sent: Tuesday, October 8, 2013 1:57:35 PM Subject: Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats what version of FS are you u

Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats

2013-10-08 Thread Douglas N Greve
hank you again for the help! > Tara > > - Original Message - > From: "Douglas N Greve" > To: "Tara Ann Miskovich" > Cc: freesurfer@nmr.mgh.harvard.edu > Sent: Tuesday, October 8, 2013 10:48:10 AM > Subject: Re: [Freesurfer] Cluster Annotation f

Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats

2013-10-08 Thread Tara Ann Miskovich
ich" Cc: freesurfer@nmr.mgh.harvard.edu Sent: Tuesday, October 8, 2013 10:48:10 AM Subject: Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats Did you generate the annotation from a qdec analysis of lgi? If so, then there should be a file already there called something like mc-z.abs.th

Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats

2013-10-08 Thread Douglas N Greve
cache. Is this what > you mean? > > Thank you again for the help! > Tara > > - Original Message - > From: "Douglas N Greve" > To: "Tara Ann Miskovich" > Cc: freesurfer@nmr.mgh.harvard.edu > Sent: Monday, October 7, 2013 1:59:37

Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats

2013-10-08 Thread Tara Ann Miskovich
Message - From: "Douglas N Greve" To: "Tara Ann Miskovich" Cc: freesurfer@nmr.mgh.harvard.edu Sent: Monday, October 7, 2013 1:59:37 PM Subject: Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats Oh, you'll need to map the annotation into the individual

Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats

2013-10-07 Thread Douglas N Greve
/lh-Avg-pial_lgi-trait-Cor/mc-z.abs.th13.sig.ocn.annot > > Thank you for the help! > Tara > > > > - Original Message - > From: "Douglas N Greve" > To: freesurfer@nmr.mgh.harvard.edu > Sent: Friday, October 4, 2013 6:29:49 PM > Subject: Re: [Freesurfer

Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats

2013-10-07 Thread Tara Ann Miskovich
ubject: Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats This may sound incredibly trivial, but try putting a "./" infront of qdec, ie, "-a ./qdec/..." doug On 10/04/2013 03:42 PM, Tara Ann Miskovich wrote: > Hi Everyone, > > I am having trouble running

Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats

2013-10-04 Thread Douglas N Greve
This may sound incredibly trivial, but try putting a "./" infront of qdec, ie, "-a ./qdec/..." doug On 10/04/2013 03:42 PM, Tara Ann Miskovich wrote: > Hi Everyone, > > I am having trouble running mris_anatomical_stats on an annotation file > produced from my group analysis in qdec. > > This

[Freesurfer] Cluster Annotation file and mris_anatomical_stats

2013-10-04 Thread Tara Ann Miskovich
Hi Everyone, I am having trouble running mris_anatomical_stats on an annotation file produced from my group analysis in qdec. This is my code, but it seems to want to pull the annotation file from the subject/label directory. Should I just make a copy into everyone's label file? mris_anatomic