Re: [Freesurfer] Clarification regarding group specific average template creation

2014-12-19 Thread Bharadwaj, Pradyumna - (prad)
19, 2014 9:45 AM To: Freesurfer support list Subject: Re: [Freesurfer] Clarification regarding group specific average template creation I take it back, mris_make_subject does create the .tifs you would need for mris_register. I still doubt it will change much, but feel free to try it out and let

Re: [Freesurfer] Clarification regarding group specific average template creation

2014-12-19 Thread Bruce Fischl
___ From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Thursday, December 18, 2014 3:46 PM To: Freesurfer support list Subject: Re: [Freesurfer] Clarification regarding group specific average template creation

Re: [Freesurfer] Clarification regarding group specific average template creation

2014-12-19 Thread Bruce Fischl
essing stream? Thanks, -Prad From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Thursday, December 18, 2014 3:46 PM To: Freesurfer support list Subject: Re: [Freesurfer] Clarification regarding gr

Re: [Freesurfer] Clarification regarding group specific average template creation

2014-12-19 Thread Bharadwaj, Pradyumna - (prad)
: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Thursday, December 18, 2014 3:46 PM To: Freesurfer support list Subject: Re: [Freesurfer] Clarification regarding group specific average template creation

Re: [Freesurfer] Clarification regarding group specific average template creation

2014-12-18 Thread Bruce Fischl
Hi Prad no, everything is still ni fsaverage space. You would need to run mris_make_template to create a new template, then rerun mris_register cheers Bruce On Thu, 18 Dec 2014, Bharadwaj, Pradyumna - (prad) wrote: Hello, My question is regarding the registration procedure using a gro

[Freesurfer] Clarification regarding group specific average template creation

2014-12-18 Thread Bharadwaj, Pradyumna - (prad)
Hello, My question is regarding the registration procedure using a group specific average template. I ran recon-all for my group(with >100 subjects), created an average subject using make_average_subject and then used recon-all qcache by referencing the average template that I just created. I