Re: [Freesurfer] Clarification for aseg edits in longitudinal phase

2017-07-26 Thread Martin Reuter
Hi Tamara, this should finish the longitudinal recon-all. It picks it up from where you edited and completes the rest. It needs to know about the name of the time point and the name of the base to access files from there (e.g. to map initial surfaces from base ect). Best, Martin On 07/24

[Freesurfer] Clarification for aseg edits in longitudinal phase

2017-07-24 Thread Tamara Tavares
Hello, I have made edits to aseg files in the longitudinal outputs (participantID.long.participantID-temp). I am beginning the reconstruction phase and as suggested by a response to an earlier post I am running: recon-all -long tpN1 template ID -autorecon2-noaseg -autorecon3, where tpN1 is cross-s