Re: [Freesurfer] Choroid Plexus in ventricles

2012-09-13 Thread Bruce Fischl
volume? Do you think we should do some manual tracing to confirm > Freesurfer results? > > Thanks, > Tracy > > > From: Bruce Fischl > Date: Wed, Sep 12, 2012 at 7:14 PM > Subject: Re: [Freesurfer] Choroid Plexus in ventricles > To: Hugh Wang > Cc: freesurfer@nmr.mgh.

Re: [Freesurfer] Choroid Plexus in ventricles

2012-09-13 Thread Tracy A. Butler
, Sep 12, 2012 at 7:14 PM Subject: Re: [Freesurfer] Choroid Plexus in ventricles To: Hugh Wang Cc: freesurfer@nmr.mgh.harvard.edu Hi Hugh it depends on the dataset. It's a bit mysterious to me why sometimes the choroid is so bright and other times not. I've definitely seen it in th

Re: [Freesurfer] Choroid Plexus in ventricles

2012-09-12 Thread Bruce Fischl
Hi Hugh it depends on the dataset. It's a bit mysterious to me why sometimes the choroid is so bright and other times not. I've definitely seen it in the inf lat ventricles. We included choroid to avoid confusing it with hippocampus so I doubt we labeled any in the 3rd or 4th ventricles. cheer

[Freesurfer] Choroid Plexus in ventricles

2012-09-12 Thread Hugh Wang
Dear Freesurfer Users, When masking out the ventricles and choroid plexus from aparg+aseg, I found there were choroid plexus volumes in lateral ventricles, but nothing in inferior lateral ventricles or 3rd/4th ventricle. Did I miss those tiny volumes or the Freesurfer didn't segment choroid plexus