Re: [Freesurfer] Changing the color in Edit Segmentation tool

2007-05-18 Thread Jenni Pacheco
It's a MAC thing. With a standard three-button mouse it's the middle button that adds the label. If you use a MAC mouse or other non 3-button mouse there are other keystrokes which you may have to do in order to have the middle button option. sorry, Jenni On Fri, 18 May 2007, Jared Conley w

Re: [Freesurfer] Changing the color in Edit Segmentation tool

2007-05-18 Thread Jared Conley
Jenni Pacheco wrote: When you are editing the segmentation, are you using the middle button to change the label? jenni On Fri, 18 May 2007, Jared Conley wrote: Jenni Pacheco wrote: Hi Jared, How are you selecting the segmentation that you wish to be changing it to? Have you opened the Seg

Re: [Freesurfer] Changing the color in Edit Segmentation tool

2007-05-18 Thread Jenni Pacheco
When you are editing the segmentation, are you using the middle button to change the label? jenni On Fri, 18 May 2007, Jared Conley wrote: Jenni Pacheco wrote: Hi Jared, How are you selecting the segmentation that you wish to be changing it to? Have you opened the Segmentation Bruch Info d

Re: [Freesurfer] Changing the color in Edit Segmentation tool

2007-05-18 Thread Jared Conley
Jenni Pacheco wrote: Hi Jared, How are you selecting the segmentation that you wish to be changing it to? Have you opened the Segmentation Bruch Info dialog window and selected from the list in there? jenni On Fri, 18 May 2007, Jared Conley wrote: In response to the questions, I do see the

Re: [Freesurfer] Changing the color in Edit Segmentation tool

2007-05-18 Thread Jenni Pacheco
Hi Jared, How are you selecting the segmentation that you wish to be changing it to? Have you opened the Segmentation Bruch Info dialog window and selected from the list in there? jenni On Fri, 18 May 2007, Jared Conley wrote: In response to the questions, I do see the segmentation properly

Re: [Freesurfer] Changing the color in Edit Segmentation tool

2007-05-18 Thread Jared Conley
In response to the questions, I do see the segmentation properly in colors (as a translucent color overlay on the anatomical), and I am sure I am using the Edit Segmentation tool. Clicking and dragging with the tool does change the segmentation volume, it just does not change it to the "Sgmtn

Re: [Freesurfer] Changing the color in Edit Segmentation tool

2007-05-17 Thread Kevin Teich
Sorry, I was thinking you were talking about Scuba. Do you see the segmentation properly, in colors? If not, there was probably an error in loading the segmentation; do you see any errors in the shell window? If you do see the segmentation volume displayed properly as a translucent color overlay

Re: [Freesurfer] Changing the color in Edit Segmentation tool

2007-05-17 Thread Jared Conley
Yes, I believe so. The layer's color map is set to FreeSurferColorLUT.txt when loading the segmentation. The Segmentation Brush source is set at Segmentation (under Configure Segmentation Brush)--I imagine that's what you are referring to when you say "target layer." Kevin Teich wrote:

Re: [Freesurfer] Changing the color in Edit Segmentation tool

2007-05-17 Thread Kevin Teich
Are you sure the Target Layer is set to the segmentation volume layer? And that that layer's color map type is set to LUT? On Thu, May 17, 2007 at 11:23:49AM -0400, Jared Conley wrote: > I am attempting to edit the segmentation results in TkMedit, according > to the following Wiki directions ( >

[Freesurfer] Changing the color in Edit Segmentation tool

2007-05-17 Thread Jared Conley
I am attempting to edit the segmentation results in TkMedit, according to the following Wiki directions ( > TkMeditGuide/TkMeditWorkingWithData/TkMeditSegmentations): A segmentation can be edited with the Edit Segmentation tool, which can be activated by pushing the icon_copy.gif button on the M