Re: [Freesurfer] Changing and Saving Overlay Config in Tksurfer

2010-09-29 Thread Douglas N Greve
You can set the min, mid, and slope from the command-line with -fmin, -fmid, and -fslope (it computes the max based on those 3). The min and the max you can set with env variables, like: setenv FS_TKFTHRESH 2 setenv FS_TKFMAX 3 this will apply to both tksurfer and tkmedit. Note that when the MA

[Freesurfer] Changing and Saving Overlay Config in Tksurfer

2010-09-29 Thread Adam Nitenson
Hi Freesurfers, I was wondering if there was a way to save any configurations you make to functional overlays (sig.mgh / sig.nii) in Tksurfer so you don't need to change them again. When I go to View --> Configure --> Overlay, it seems that the default is "Linear Opaque" with Min = 2.0 and Max = 5