Re: [Freesurfer] Calling segmentThalamicNuclei.sh Issue

External Email - Use Caution That error is usually from using the wrong shell being used to run a script..  Could you send along the command being used or maybe a screenshot of how it is being run from the terminal ? - R. On Aug 7, 2023, at 07:11, Rowan Lawrence

[Freesurfer] Calling segmentThalamicNuclei.sh Issue

External Email - Use Caution Hello FreeSurfers, I have a student who is trying to run the segmentThalamicNuclei module on some T1 images, using the segmentThalamicNuclei.sh script. All of the subjects have been run through the main recon-all pipeline and each participant has th