I think I would download a new version of mri_segstats (call it
something like mri_segstats-5.3)
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0-patch
cd $SUBJECTS_DIR/subject
mri_segstats --seg mri/aseg.mgz --sum stats/aseg.53.stats --pv
mri/norm.mgz --empty --brainmask mri/brain
Hi,
I was wondering how best to calculate total brain volume when using outputs
from free surfer 5.1. Could I use aseg SupraTentorial Volume measurements and
subtract aseg ventricle, csf, and choroid plexus measurements? Is there a way
to do calculate total brain volume using aparc outputs? I s
