Re: [Freesurfer] CORRECTING DEFECT recon-all giant cyst

2017-12-27 Thread Diamond, Bram Ryder
freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Loeffler, Martin Sent: Saturday, December 23, 2017 4:26:15 AM To: Freesurfer support list Subject: Re: [Freesurfer] CORRECTING DEFECT recon-all giant cyst Dear Bruce, Dear Bram, Thanks a lot for having a look. Unfortunately the left hemisp

Re: [Freesurfer] CORRECTING DEFECT recon-all giant cyst

2017-12-23 Thread Loeffler, Martin
Ryder Gesendet: Mittwoch, 13. Dezember 2017 23:23 An: Freesurfer support list Betreff: Re: [Freesurfer] CORRECTING DEFECT recon-all giant cyst Hi Martin, We've taken a look at the scans you uploaded, and unfortunately it won't be possible to run the standard recon-all on your subje

Re: [Freesurfer] CORRECTING DEFECT recon-all giant cyst

2017-12-13 Thread Diamond, Bram Ryder
del of the right hemisphere. Best, Bram From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Loeffler, Martin Sent: Tuesday, December 12, 2017 11:57:36 AM To: Freesurfer support list Subject: Re: [Freesurfer] CORRECTING DEFECT recon-all giant cyst Dea

Re: [Freesurfer] CORRECTING DEFECT recon-all giant cyst

2017-12-12 Thread Loeffler, Martin
2017 16:35 An: Freesurfer support list Betreff: Re: [Freesurfer] CORRECTING DEFECT recon-all giant cyst Hi Martin we are happy to take a look, but can't really tell much from a screenshot. Feel free to upload the subject to our ftp site if you want us to help cheers Bruce On Tue, 12 Dec

Re: [Freesurfer] CORRECTING DEFECT recon-all giant cyst

2017-12-12 Thread Bruce Fischl
esurfer support list Betreff: Re: [Freesurfer] CORRECTING DEFECT recon-all giant cyst Hi Martin a defect that large means that something big went wrong (skull or dura attached, etc...). Try looking at the ?h.orig.nofix and/or the ?h.inflated.nofix surfaces with the ?h.defect_labels overlayed to f

Re: [Freesurfer] CORRECTING DEFECT recon-all giant cyst

2017-12-12 Thread Loeffler, Martin
ce Fischl [fis...@nmr.mgh.harvard.edu] Gesendet: Montag, 11. Dezember 2017 22:47 An: Freesurfer support list Betreff: Re: [Freesurfer] CORRECTING DEFECT recon-all giant cyst Hi Martin a defect that large means that something big went wrong (skull or dura attached, etc...). Try looking at the ?h.orig.n

Re: [Freesurfer] CORRECTING DEFECT recon-all giant cyst

2017-12-11 Thread Bruce Fischl
Hi Martin a defect that large means that something big went wrong (skull or dura attached, etc...). Try looking at the ?h.orig.nofix and/or the ?h.inflated.nofix surfaces with the ?h.defect_labels overlayed to find defect 9 cheers Bruce On Mon, 11 Dec 2017, Loeffler, Martin wrote: Dear

[Freesurfer] CORRECTING DEFECT recon-all giant cyst

2017-12-11 Thread Loeffler, Martin
Dear FreeSurfer team, For a case report I'm running recon-all on a patient with a giant arachnoid cyst in the left hemisphere. It gets stuck at this point (last message): CORRECTING DEFECT 9 (vertices=21935, convex hull=1992, v0=31849) XL defect detected... It is stuck here since a whole day now,