Re: [Freesurfer] CAT12 surfaces on tkregister2 and Freeview

2019-02-25 Thread Loucao, Ricardo
External Email - Use Caution Dear Douglas, In the spirit of good documentation, I have yet another update. I found that ctr was in fact not the correct property to look at. Instead, one should use the c_ras vector (i.e. from orig.mgz) for the translation of the CAT surface. I w

Re: [Freesurfer] CAT12 surfaces on tkregister2 and Freeview

2019-02-25 Thread Loucao, Ricardo
External Email - Use Caution Dear Douglas, I’m sorry for not being explicit. What I meant to say was that the overlay was still “offset" from the actual volume. See attachment. It is the side view of the CAT 3D surface in grey and in red what should be the qMRI overlay (generat

Re: [Freesurfer] CAT12 surfaces on tkregister2 and Freeview

2019-02-22 Thread Greve, Douglas N.,Ph.D.
what do you mean the surface is still messed up in freeview? On 2/22/19 8:58 AM, Loucao, Ricardo wrote: External Email - Use Caution Thanks for the reply! I tried the --vol-geom orig.mgz option but to no avail. Small update: I inspected the metadata on the surface files using mris_info

Re: [Freesurfer] CAT12 surfaces on tkregister2 and Freeview

2019-02-22 Thread Loucao, Ricardo
External Email - Use Caution Thanks for the reply! I tried the --vol-geom orig.mgz option but to no avail. Small update: I inspected the metadata on the surface files using mris_info and discovered that the ctr property was different between the CAT generated surface and the pia

Re: [Freesurfer] CAT12 surfaces on tkregister2 and Freeview

2019-02-21 Thread Greve, Douglas N.,Ph.D.
When you run mris_convert try adding --vol-geom orig.mgz where orig.mgz On 2/20/19 7:14 AM, Loucao, Ricardo wrote: > > External Email - Use Caution > > Dear FS experts and users, > > I’m having some troubles with CAT surfaces visualisation in > tkregister2 and Freeview. > > Context: I’ve