Re: [Freesurfer] Building atlas by Xhemi: Segmentation fault (core dumped)

2021-04-19 Thread Li-Zhen Chen
External Email - Use Caution Not sure what is going wrong here. Try running mri_annotation2label --subject myatlas.i3 --hemi lh --outdir /media/chenlz/Zixuans1/MRI_Data/Human_MRI/CCS_PrePro/myatlas.i3/make_cortex_label.tmp.8214 --annotation aparc.a2009s Does it segfault in the s

Re: [Freesurfer] Building atlas by Xhemi: Segmentation fault (core dumped)

2021-04-18 Thread Douglas N. Greve
Not sure what is going wrong here. Try running mri_annotation2label --subject myatlas.i3 --hemi lh --outdir /media/chenlz/Zixuans1/MRI_Data/Human_MRI/CCS_PrePro/myatlas.i3/make_cortex_label.tmp.8214 --annotation aparc.a2009s Does it segfault in the same way? Can you confirm that you are not run

[Freesurfer] Building atlas by Xhemi: Segmentation fault (core dumped)

2021-04-14 Thread Li-Zhen Chen
External Email - Use Caution Hello Freesurfer Developer, I'm building my own symmetric atlas by Xhemi, something is wrong at the final step(Make final iteration) Here is my code: make_average_subject --out myatlas.i3 --surf-reg myatlas.i2.sphere.reg --subjects sub_01 sub_02 --x