Re: [Freesurfer] Build fsaverage

2016-06-06 Thread Douglas N Greve
fsaverage is distributed with freesurfer. Do you have freesurfer installed on your new computer? If so, then just create a symbolic link with cd $SUBJECTS_DIR ln -s $FREESURFER_HOME/subjects/fsaverage On 06/04/2016 04:44 PM, shi yao wang wrote: > Hello, Thank you very much for the reply! > > 1.

[Freesurfer] Build fsaverage

2016-06-04 Thread shi yao wang
Hello, Thank you very much for the reply! 1. I copied calculated data into a new computer and I cannot find "fsaverage". 2. Bruce, thank you! I used make_average_subject command. However, it shows that error message: "lack of memory". I am wondering how can I do that. Thank you for helps again!

Re: [Freesurfer] build fsaverage

2016-06-03 Thread Bruce Fischl
Hi Lawrence you can you the make_average_subject script, but as Doug implies you probably don't need to. Our warp is high-enough dimensional that you rarely need to build average subjects from your own population cheers Bruce On Fri, 3 Jun 2016, shi yao wang wrote: > > Hello ! > > I work

Re: [Freesurfer] build fsaverage

2016-06-03 Thread Douglas N Greve
why do you need rebuilt fsaverage? On 06/03/2016 05:06 PM, shi yao wang wrote: > Hello ! > > I work for the department of radiology, Emory University. > > We're planning to use the FreeSurfer software suite (or more precisely, > the surface-based stream ) in a project that aims to compare cortical

[Freesurfer] build fsaverage

2016-06-03 Thread shi yao wang
Hello ! I work for the department of radiology, Emory University. We're planning to use the FreeSurfer software suite (or more precisely, the surface-based stream ) in a project that aims to compare cortical thickness between treatment and nontreatment patients. We have finished recon-all for al