Hi Mohamad,
For now, our brainstem module separates this structure into midbrain, pons,
medulla and SCP - please see this link:
https://surfer.nmr.mgh.harvard.edu/fswiki/BrainstemSubstructures
If you want to segment more specific nuclei, we don’t have a tool capable of
doing that yet.
Cheers,
/Eu
Hi Iglesias,
Kindly, we would like to know if there are any methods in Freesurfer that can
help to segment that brain stem nucleus. I mean output the nucleus
automatically as a small masks, so these small masks can be used in other
analyses (e.g. fMRI)
I am thinking of creating masks for these
