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*From:* freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Ani Varjabedian
*Sent:* Tuesday, June 7, 2016 5:45:43 AM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] Brainmask edit error
Hi Sabrina,
Just wanted to update you on my progress.
I tried editing the wm.mgz and fill
@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Brainmask edit error
Hi Sabrina,
Just wanted to update you on my progress.
I tried editing the wm.mgz and filling in the hole to see if that might help
things. If we can get the wm surface accurate then there is a good chance the
pial surf (which grows from the white
instead of trying to edit the surfaces?
Thank you,
Sabrina
From:freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Bruce Fischl
Sent: Monday, May 23, 2016 12:30:30 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Brainmask edit error
because it
tion. Would it be possible to find a
>>>>> workaround? I want to generate stats on intensity over an ROI for these
>>>>> stroke subjects. For the brain matter not included in the surface, can I
>>>>> create a volume label file in freeview instead of try
eview instead of trying to edit the surfaces?
Thank you,
Sabrina
From:freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Bruce Fischl
Sent: Monday, May 23, 2016 12:30:30 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Brainmask edit error
bec
edit the surfaces?
>>>
>>> Thank you,
>>> Sabrina
>>> ________
>>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>>> on behalf of Bruce Fischl
>>>
>>> Sent: Monday, May 23, 2016 12:30:30 PM
>
ble to get good surfaces with
extensive strokes?
Thank you,
Sabrina
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Bruce Fischl
Sent: Thursday, May 19, 2016 11:24:51 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Brainmask edit error
you,
Sabrina
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Bruce Fischl
Sent: Monday, May 23, 2016 12:30:30 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Brainmask edit error
because it violates too many of our assumptions about
Freesurfer support list
> Subject: Re: [Freesurfer] Brainmask edit error
>
> Hi Sabrina
>
> it's tough to tell from just the 2 slices. If you upload the subject one
> of us will take a look, but it may not be possible to get good surfaces
> with that extensive a stro
on behalf of Bruce Fischl
Sent: Thursday, May 19, 2016 11:24:51 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Brainmask edit error
Hi Sabrina
it's tough to tell from just the 2 slices. If you upload the subject one
of us will take a look, but it may not be possible to get good sur
Hi Sabrina
it's tough to tell from just the 2 slices. If you upload the subject one
of us will take a look, but it may not be possible to get good surfaces
with that extensive a stroke
cheers
Bruce
On Wed, 18 May 2016, Sabrina Yu wrote:
Hello,
I'm having problems with regenerating the s
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