Re: [Freesurfer] Base correction, longitudinal analysis

2021-11-01 Thread Eszter Boros
External Email - Use Caution Thank you so much! This was very helpful. I did not know that the command will respect my edits. For some reason, this did not happen for one of the subjects, and it looked like that the command completely regenerated the base. But it worked when I trie

Re: [Freesurfer] Base correction, longitudinal analysis

2021-08-18 Thread Douglas N. Greve
That command will re-run the base, but it should respect your edits. Is that not the case? If you just want to re-run part of it, you can specify the stage (eg, -autorecon2) instead of -all On 8/18/2021 8:05 PM, Eszter Boros wrote: External Email - Use Caution Thank you for your answ

Re: [Freesurfer] Base correction, longitudinal analysis

2021-08-18 Thread Eszter Boros
External Email - Use Caution Thank you for your answer! I think I should clarify this question a little bit. So this is about correcting the Base. And run recon-all *after *correcting the Base. What command should I use here? if I want to regenerate only the Base after correcting