Re: [Freesurfer] bad aseg but WM and pial surfaces look good

2018-03-01 Thread Bruce Fischl
Hi Colleen can you upload a sample subject? Otherwise there is really no way for us to judge. cheers Bruce On Thu, 1 Mar 2018, C.P.E. Rollins wrote: > Hi Freesurfer developers, > > I've processed my sample of T1 scans through recon-all and have > corrected the pial and WM surfaces. The surface

[Freesurfer] bad aseg but WM and pial surfaces look good

2018-03-01 Thread C.P.E. Rollins
Hi Freesurfer developers, I've processed my sample of T1 scans through recon-all and have corrected the pial and WM surfaces. The surfaces look mostly good, though when I checked the aseg segmentations they are pretty poor and there is huge variability in the volumes I get from asegstats2table

Re: [Freesurfer] Bad aseg

2009-06-29 Thread Bruce Fischl
ok On Mon, 29 Jun 2009, Falk Lüsebrink wrote: I could do that, but not before wednesday. - Original Message - From: "Bruce Fischl" To: "Falk Lüsebrink" Cc: Sent: Monday, June 29, 2009 6:53 PM Subject: Re: [Freesurfer] Bad aseg do you want to send us the sub

Re: [Freesurfer] Bad aseg

2009-06-29 Thread Falk Lüsebrink
I could do that, but not before wednesday. - Original Message - From: "Bruce Fischl" To: "Falk Lüsebrink" Cc: Sent: Monday, June 29, 2009 6:53 PM Subject: Re: [Freesurfer] Bad aseg do you want to send us the subject? On Mon, 29 Jun 2009, [UTF-8] Falk Lüsebri

Re: [Freesurfer] Bad aseg

2009-06-29 Thread Falk Lüsebrink
Yes, the skull stripping looks nice. - Original Message - From: "Bruce Fischl" To: "Falk Lüsebrink" Cc: Sent: Monday, June 29, 2009 6:19 PM Subject: Re: [Freesurfer] Bad aseg Did you check the skull stripping? On Jun 29, 2009, at 3:54 AM, F

Re: [Freesurfer] Bad aseg

2009-06-29 Thread Bruce Fischl
do you want to send us the subject? On Mon, 29 Jun 2009, [UTF-8] Falk Lüsebrink wrote: Yes, the skull stripping looks nice. - Original Message - From: "Bruce Fischl" To: "Falk Lüsebrink" Cc: Sent: Monday, June 29, 2009 6:19 PM Subject: Re: [Freesurfer] Bad

Re: [Freesurfer] Bad aseg

2009-06-29 Thread Bruce Fischl
Did you check the skull stripping? On Jun 29, 2009, at 3:54 AM, Falk Lüsebrink wrote: ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer