So far it isn't anymore. It's more of a problem with ANTs now.
BBRegister works with --init-header for partial FoV T1 and mean EPI are
more or less in alignment. But if they wouldn't be then one would have a
problem with registration.
On 07/13/2017 12:35 AM, Douglas N Greve wrote:
> Is this still
Is this still a problem?
On 07/11/2017 09:51 AM, Paul Glad Mihai wrote:
> Hi Bruce,
>
> Thanks for the quick reply. I've just finished rerunning it with spm,
> fsl and header init and the latter seemed to work if I write out a
> _bbreg.nii file. The former two failed, however. Apparently using the
sure. I'll leave the rest to Doug except to say that a full head EPI is a
pretty cheap and useful thing to get, and that it is not surprising the
using the header (assuming they are same session) works better than
anything else
cheers
Bruce
On Tue, 11 Jul 2017, Paul Glad Mihai wrote:
> Hi Bru
Hi Glad
can you send us the full command line you are using and screen output?
thanks
Bruce
On
Tue, 11 Jul 2017, Paul Glad Mihai wrote:
> Dear List,
>
> I've been quite frustrated with the BBRegister results when trying to
> register a partial field of view EPI mean functional image to a T1 sc
Dear List,
I've been quite frustrated with the BBRegister results when trying to
register a partial field of view EPI mean functional image to a T1 scan.
I've tried different init arguments (fsl, spm, header) and none really
work. I've found that the initial registration is causing the problem,
si
