Re: [Freesurfer] Apply talairach.xfm to orig.mgz

2014-04-01 Thread Francesco Baldacchini
Thanks, I'll try with tkregister2 as I want to just check talairach and not use it elsewhere. Still thanks for the help and quickness, Francesco Baldacchini 2014-04-01 14:18 GMT+02:00 Bruce Fischl : > Hi Francesco > > look at mri_vol2vol -help and search for talairach. It has an explicit > opti

Re: [Freesurfer] Apply talairach.xfm to orig.mgz

2014-04-01 Thread Bruce Fischl
Hi Francesco look at mri_vol2vol -help and search for talairach. It has an explicit option for this (--tal). Or you can do it directly in tkregister2 if all you want to do is visualize the results of applying the transform (this is also in the mri_vol2vol help) cheers Bruce On Tue, 1 Apr 201

[Freesurfer] Apply talairach.xfm to orig.mgz

2014-04-01 Thread Francesco Baldacchini
Hi everybody, I'm in the process of studying all the Recon-all steps to find the step that is giving me problems in my study. Now I've just run the -talairach input and I would like to see if the talairach.xfm came out correctly by applying it to my ORIG.mgz, how can it do it? Which command do I h