RE: [Freesurfer] Aparcstats question

2009-03-12 Thread Dankner, Nathan (NIH/NIMH) [F]
me intracranial volume includes >>> everything, even non-cortical regions? If that is so, is >>> BrainSegVol >>> a measure of total cortical volume? I also noticed that the >>> values in >>> BrainSegVol differ greatly between the two stats files. Y

Re: [Freesurfer] Aparcstats question

2009-03-11 Thread Krish Subramaniam
Vol differ greatly between the two stats files. Your help is greatly appreciated, Nathan -Original Message- From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] Sent: Wed 3/11/2009 12:47 PM To: Dankner, Nathan (NIH/NIMH) [F] Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Aparcs

Re: [Freesurfer] Aparcstats question

2009-03-11 Thread Michael Harms
in > > BrainSegVol differ greatly between the two stats files. Your help is > > greatly appreciated, > > > >> > >> Nathan > >> > >> > >> -Original Message- > >> From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] >

Re: [Freesurfer] Aparcstats question

2009-03-11 Thread Douglas N Greve
p is greatly appreciated, Nathan -Original Message- From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] Sent: Wed 3/11/2009 12:47 PM To: Dankner, Nathan (NIH/NIMH) [F] Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Aparcstats question Hi Nathan, the "unknown" l

RE: [Freesurfer] Aparcstats question

2009-03-11 Thread Bruce Fischl
athan (NIH/NIMH) [F] Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Aparcstats question Hi Nathan, the "unknown" label is intended to be non-cortical regions such as the callosum, and should be ignord. I think total white matter volume is generated by default, but maybe N

RE: [Freesurfer] Aparcstats question

2009-03-11 Thread Dankner, Nathan (NIH/NIMH) [F]
...@nmr.mgh.harvard.edu] Sent: Wed 3/11/2009 12:47 PM To: Dankner, Nathan (NIH/NIMH) [F] Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Aparcstats question Hi Nathan, the "unknown" label is intended to be non-cortical regions such as the callosum, and should be ignord. I think t

Re: [Freesurfer] Aparcstats question

2009-03-11 Thread Bruce Fischl
Hi Nathan, the "unknown" label is intended to be non-cortical regions such as the callosum, and should be ignord. I think total white matter volume is generated by default, but maybe Nick or Doug can correct me (although Nick is out of the country) Bruce On Wed, 11 Mar 2009, Dankner, Nath

[Freesurfer] Aparcstats question

2009-03-11 Thread Dankner, Nathan (NIH/NIMH) [F]
Hello all, I sent this a couple of weeks ago but it must have slipped through the cracks: I have a couple of questions regarding the stats files. First, at the beginning of the aparc.stats tables, there is a measure that is labeled ³unknown.² Is this total average thickness throughout the cort

[Freesurfer] Aparcstats question

2009-02-27 Thread Nathan Dankner
I have a couple of questions regarding the stats files. First, at the beginning of the aparc.stats tables, there is a measure that is labeled ³unknown.² Is this total average thickness throughout the cortex, or just some throw-away measure? Secondly, I have heard that there are command line flag