-all -all log. I was wondering
if you could have a look to confirm whether this is running alright.
Thank you
Pablo
Date: Thu, 26 Feb 2015 09:07:28 -0500
From: fis...@nmr.mgh.harvard.edu
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Analyze format
Hi Pablo
I really don't kno
urfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Analyze format
Hi Pablo
the mat file is an extension to analyze the specifies the direction
cosines. Without it we are only guessing at the anatomical orientation of
the image. Unless these images have some marker such as a vitamin E capsule
how
Thank you Bruce for the piece of mind.
The images were neurologically oriented (L=L) for analysis with SPM. Do you
know if this helps at all?
Thanks
Pablo
Date: Wed, 25 Feb 2015 10:44:48 -0500
From: fis...@nmr.mgh.harvard.edu
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Analyze
Hi Pablo
the mat file is an extension to analyze the specifies the direction
cosines. Without it we are only guessing at the anatomical orientation of
the image. Unless these images have some marker such as a vitamin E capsule
how will you ever know if we got left/right correct?
cheers
Bruc
Dear FS experts,I am trying to run recon-all on data with analyze format. I am
aware that this is not the best format, however I do not have DICOM or NIFTI
original data as this is a very old data from University of North Carolina.
When I run import the images with recon-all -i. I am getting the
Can you give us more detail? In particular, look at:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
doug
Chacko Cherian wrote:
Hello,
I am having some trouble in running "Analyze" format
images on freesurfer.Could someone please guide me on
how to run images on this format..
THanx
Chacko.
Hello,
I am having some trouble in running "Analyze" format
images on freesurfer.Could someone please guide me on
how to run images on this format..
THanx
Chacko.
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h
yes, it is the orientation field I need to set. I found a lossless way
to re-orient my data using another program before passing it to
freesurfer, so I guess I can use that, but I would prefer to do it all
in one step with freesurfer, is the -i{ijk}d method lossless?
Thanks,
Sasha
Disclaimer:
Do you mean the orientation field? I thought Tosa had set it up to do
this, but I could be wrong. If it does not now, then it would have to be
reprogrammed which means that it probably won't happen. You can set the
direction cosines on the command-line with -i{ijk}d. If you have another
volum
Dear all,
When converting from analyze format is there any way to get
mri_convert to read in orientation information from the analyze header
file?
Thanks,
Sasha
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