Re: [Freesurfer] Amygdala Segmentation T1.v20 Command

2020-01-10 Thread Iglesias Gonzalez, Juan E.
fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com From: on behalf of "Deng, Yushan Wisteria" Reply-To: Freesurfer support list Date: Friday, 10 January 2020 at 19:36 To: "freesurfer@nmr.mgh.harvard.edu" Subject: Re: [Freesurfer] Amygdala Segmentatio

Re: [Freesurfer] Amygdala Segmentation T1.v20 Command

2020-01-08 Thread Iglesias Gonzalez, Juan E.
Freesurfer support list Date: Tuesday, 7 January 2020 at 21:04 To: "freesurfer@nmr.mgh.harvard.edu" Subject: Re: [Freesurfer] Amygdala Segmentation T1.v20 Command Hi Eugenio, Thank you so much for your response! I did use the development version to run the command. Would you have any

Re: [Freesurfer] Amygdala Segmentation T1.v20 Command

2020-01-07 Thread Deng, Yushan Wisteria
esiasgonza...@mgh.harvard.edu>> Subject: Re: [Freesurfer] Amygdala Segmentation T1.v20 Command To: Freesurfer support list mailto:freesurfer@nmr.mgh.harvard.edu>> Message-ID: <8970525b-ed9a-4f56-901a-50f5787c9...@mgh.harvard.edu<mailto:8970525b-ed9a-4f56-901a-50f5787c9...@mgh.harvard.edu>>

Re: [Freesurfer] Amygdala Segmentation T1.v20 Command

2020-01-07 Thread Iglesias Gonzalez, Juan E.
Reply-To: Freesurfer support list Date: Friday, 3 January 2020 at 20:31 To: "freesurfer@nmr.mgh.harvard.edu" Subject: [Freesurfer] Amygdala Segmentation T1.v20 Command Dear Freesurfer experts, Happy new year! I encountered an issue with the quantifyHAsubregions.sh command as I tried

[Freesurfer] Amygdala Segmentation T1.v20 Command

2020-01-03 Thread Deng, Yushan Wisteria
Dear Freesurfer experts, Happy new year! I encountered an issue with the quantifyHAsubregions.sh command as I tried to extract amygdala subnuclei values from a previously segmented dataset. I tried both commands below, specifying the version (v20) and not: quantifyHAsubregions.sh amygNuc T1 All