Re: [Freesurfer] Abormally high foldind index

2021-04-19 Thread Fischl, Bruce
] Abormally high foldind index External Email - Use Caution Hi Bruce, I looked at the pial surfaces and WM by running this for the outlier subjects: freeview -v subject1/mri/T1.mgz \ subject1/mri/brainmask.mgz \ -f subject1/surf/lh.white:edgecolor=yellow \ subject1/surf

Re: [Freesurfer] Abormally high foldind index

2021-04-19 Thread Ellen Ji
Have you looked at the surfaces for those subjects? > > Cheers > Bruce > > -Original Message- > From: freesurfer-boun...@nmr.mgh.harvard.edu > On Behalf Of Ellen Ji > Sent: Tuesday, March 30, 2021 5:44 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: [F

Re: [Freesurfer] Abormally high foldind index

2021-03-30 Thread Fischl, Bruce
] Abormally high foldind index External Email - Use Caution Dear Experts, While the majority of our subjects have a folding index between 5-30, there are a couple of *extreme* outliers in the thousands or even negative. Could this hint that a particular part of recon-all failed and

[Freesurfer] Abormally high foldind index

2021-03-30 Thread Ellen Ji
External Email - Use Caution Dear Experts, While the majority of our subjects have a folding index between 5-30, there are a couple of *extreme* outliers in the thousands or even negative. Could this hint that a particular part of recon-all failed and should be rerun? Thank yo