Re: [Freesurfer] ALLvsFIX contrast

2014-12-02 Thread Douglas Greve
No, sorry, I did not expect so many conditions when I wrote mkcontrast-sess 15 years ago :-). I would just write a script to generate the command line. doug On 12/1/14 2:15 AM, Reza Rajimehr wrote: > Hi, > > In an fMRI experiment, I have 60 conditions. I want to make ALLvsFIX > contrast to sel

[Freesurfer] ALLvsFIX contrast

2014-11-30 Thread Reza Rajimehr
Hi, In an fMRI experiment, I have 60 conditions. I want to make ALLvsFIX contrast to select vertices that are visually responsive, by finding vertices that have ces values greater than zero in this contrast. For this, I can run: mkcontrast-sess -analysis analysisname -contrast allvsfix -a 1 -a 2