Re: [Freesurfer] AAL Segmentation with Freesurfer {Disarmed}

2020-11-16 Thread Douglas N. Greve
Please remember to post to the FS list ... That will not work because the AAL atlas is not in the same space. I think the AAL is in colin27 space, so download colin27, run recon-all, and then map the labels to the surface. On 11/15/2020 9:11 AM, Stephan Wunderlich wrote: External Em

Re: [Freesurfer] AAL Segmentation with Freesurfer

2020-11-13 Thread Douglas N. Greve
run recon-all on the AAL anatomical T1w volume template On 11/12/2020 1:52 PM, Stephan Wunderlich wrote: > External Email - Use Caution > > Dear all, > > Is there a possibility to segment a brain with freesurfer to an AAL Atlas. So > that I get the volume and amount of voxel for all the

[Freesurfer] AAL Segmentation with Freesurfer

2020-11-12 Thread Stephan Wunderlich
External Email - Use Caution Dear all, Is there a possibility to segment a brain with freesurfer to an AAL Atlas. So that I get the volume and amount of voxel for all the ROIs of the AAL Atlas? Best, Steph ___ Freesurfer mailing list