Hi Doug,
Before I saw your response, I modified make_average_surface code by
removing -annot aparc flag in the mris_make_template command within this
code, and my script worked fine all the way to the end without any error.
The change you made in make_average_surface would be useful in future.
Ju
It is trying to use the annotation when making the registration tif.
This is hard coded in your version of make_average_surface. I've
attached a new version. Run it with --no-annot. Let me know if it works
and I'll check it into our distribution
doug
On 10/02/2014 12:00 AM, Reza Rajimehr w
Hi Doug,
Step 1 did not generate "/iter00/lh.reg.template.tif" - though there was
no obvious error for that on the screen. Not sure if this happened because
of not having an annot file for mris_make_template. Here is what I saw on
the screen:
%%
/usr/local/freesurfer/bin/make_average_surf
oops, sorry, that should have been sphere not sphere.reg
On 09/25/2014 01:35 PM, Reza Rajimehr wrote:
> Thank you Doug for your comprehensive response. This looks clear, and I am
> going to try it out. Just one question for now:
>
> In step 1 (create a template from a single subject), I do not yet
Thank you Doug for your comprehensive response. This looks clear, and I am
going to try it out. Just one question for now:
In step 1 (create a template from a single subject), I do not yet have
"sphere.reg". Should I write "--surf-reg sphere"?
make_average_surface --subjects $subjectlist[1] \
Hi Reza, I think that this should work.
doug
set subjectlist = (subject1 subject2 ...)
1. Create a template from a single subject
make_average_surface --subjects $subjectlist[1] \
--out iter00 --template-only --surf-reg sphere.reg
2. Register each subject to this template, including first
s
Hi,
I have a question about spherical registration, and I couldn't find a
relevant answer in the mailing list.
I have two subjects S1 and S2 with corresponding functionals. I want to
show the functionals of each subject on the surfaces of the third subject
S3. I have .sphere files for S1, S2, and
