Hi Matt,
looked at the log. Everything before seems fine. Not sure what's going
on. Can you send the following files:
>From the two cross sectional runs (tp1 and tp2):
The two norms:
/space/md8/6/data/TEST/FSContainers/FREESURFERRECON_TEST_005_S_0221_45_20070321.105506_1/mri/norm.mgz
/space/md8/6
Hi Matt,
no that is not a fix. The command is supposed to invert the map from the
current time point to the base (so that we have the map from base to
this tp). Therefore the second transform in mri_concatenate is the
identity.
Your code is inverting the identity.
Again, the error happens somewhe
Hi Matt
Looks like there is something wrong with the lta mapping tp1 to the
base. Can you send the full log?
Thanks Martin
On Oct 30, 2009, at 23:32, Matt Erhart wrote:
Hello everyone,
%% After running this command with v4.5 and v4.4:
recon-all -base FREESURFERRECON_TEST_005_S_
0221BASE45
Hello everyone,
%% After running this command with v4.5 and v4.4:
recon-all -base FREESURFERRECON_TEST_005_S_
0221BASE45 -tp FREESURFERRECON_TEST_005_S_0221_45_20070321.105506_1 -tp
FREESURFERRECON_TEST_005_S_0221v2_45_20061006.104318_1 -all -force
%% I get this error:
%%
mri_concatenate_
