Hi Susan, sorry for the delay. If you want to use a random fx model,
then dont include any of the ffx options, so just
/mri_glmfit --y xrun/lh.cope1.mgh --osgm --glmdir xrun/lh.osgm.ffx
--surf fsaverage lh --label $SUBJECTS_DIR/fsaverage/label/lh.cortex.label/
doug
On 08/22/2012 07:21 PM, Susa
Hi,I’m a Freesurfer novice, and am confused about how to run a 3rd level cross-subject analysis on the surface using as input cross-run .gfeats from 10 subjects generated from a 2nd level analysis of fMRI data in FSL.Following the directions posted at http://surfer.nmr.mgh.harvard.edu/fswiki/FsTu
