Re: [Freesurfer] 2 questions on folding index, local gyrification index

2011-03-09 Thread Chris Hyatt
Hi Marie, Thank you for the information. The routine fspecial() is used in four M-files, 'make_outer_surface.m' where it is used to setup a 2-D Gaussian filter; 'read_eccen_patch.m', 'read_freq_patch.m' and 'read_patch.m', where in all 3 cases it's used to setup a simple averaging filter.

Re: [Freesurfer] 2 questions on folding index, local gyrification index

2011-03-09 Thread Marie Schaer
Hi Chris, Regarding your question on lGI, I am sure that imclose is one of the required function belonging to the Image Processing Toolbox. I may be wrong but I think that it is the only one. More specifically I don't remember that I used fspecial, where did you see it? (Apart from imclose, if

[Freesurfer] 2 questions on folding index, local gyrification index

2011-03-09 Thread Chris Hyatt
I had asked the Listserv a week or so ago if there was a way to get the Folding Index measurement for each subject and ROI using aparcstats2table, similar to area, thickness, gray volume etc.. The data are in the ?h.aparc.stats files for each subject, along with thickness, thickness std, surface