Re: [Freesurfer] problemi with mri_glmfit-sim

2014-09-03 Thread Douglas Greve
The final FWHM is larger than the maximum that the correction has been computed for. This often happens with lGI because lGI naturally has a large amount of spatial correlation. Did you smooth it prior to running mri_glmfit? If so, try it without smoothing. doug On 9/2/14 11:47 AM, angela.f

Re: [Freesurfer] problemi with mri_glmfit-sim

2014-09-02 Thread angela . favaro
HI all, I have another problem with mri_glmfit-sim. It looks for something that is not available in my FS (see below the error message) How can I solve this problem? thank you! Angela mri_glmfit-sim --glmdir qdec/Untitled --cwpvalthresh .05 --cache 1.3 abs --2spaces cmdline mri_glmfit --y /Users/

Re: [Freesurfer] problemi with mri_glmfit-sim

2014-08-26 Thread angela . favaro
thank you! that solved my problem! > > I think this has something to do with the unix LOCALE because it is > interpreting the "2.0" as "2,0" using the comma "," instead of the "." > I actually don't know how to fix this. If you run > > echo $LANG > > does it return > > en_US.UTF-8 > > if not, as

Re: [Freesurfer] problemi with mri_glmfit-sim

2014-08-24 Thread Douglas Greve
I think this has something to do with the unix LOCALE because it is interpreting the "2.0" as "2,0" using the comma "," instead of the "." I actually don't know how to fix this. If you run echo $LANG does it return en_US.UTF-8 if not, as a test, try setenv LANG en_US.UTF-8 Then run mri_glmfi

Re: [Freesurfer] problemi with mri_glmfit-sim

2014-08-24 Thread angela . favaro
Hi Doug, already done! mri_glmfit-sim --glmdir glm.lh.lh-rh.thickness.sm10 --cwpvalthresh .5 --cache 2.0 abs printf: 2.0: not completely converted ERROR: thresh = 2,0, must be 1.3, 2.0, 2.3, 3.0, 3.3, 4.0 what does it mean? I am using a MacOSX 10.6.8 thank you for your help Angela > > Try usi

Re: [Freesurfer] problemi with mri_glmfit-sim

2014-08-24 Thread Douglas Greve
Try using --cache 2.0 abs On 8/24/14 9:41 AM, angela.fav...@unipd.it wrote: > Hi all, > I am having a problem with mri_glmfit-sim: > > my command was: > mri_glmfit-sim --glmdir glm.lh.lh-rh.thickness.sm10 --cwpvalthresh .5 > --cache 2 abs > > and this is the only output: > > ERROR: thresh = 2,0,

[Freesurfer] problemi with mri_glmfit-sim

2014-08-24 Thread angela . favaro
Hi all, I am having a problem with mri_glmfit-sim: my command was: mri_glmfit-sim --glmdir glm.lh.lh-rh.thickness.sm10 --cwpvalthresh .5 --cache 2 abs and this is the only output: ERROR: thresh = 2,0, must be 1.3, 2.0, 2.3, 3.0, 3.3, 4.0 I am not able to understand which is the source of this e