*From:* freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
*Sent:* Thursday, November 11, 2021 5:39 PM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] permutation simulation errror
What do you get if you run
stem2fname /home/cns_2/Desktop/SC_PF_analysis/qdec/Untitle
f Douglas N. Greve
<mailto:dgr...@mgh.harvard.edu>
Sent: Thursday, November 11, 2021 3:46 PM
To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] permutation simulation errror
OK, can you run mri_
@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] permutation simulation errror
OK, can you run mri_glmfit-sim with --debug as the first option and
send me the output?
On 11/11/2021 4:08 PM, Brown, Alexander wrote:
External Email - Use Caution
Hi,
Yes, see attached.
-Alex
Alex Brown
CNS Core
...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
Sent: Thursday, November 11, 2021 3:46 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] permutation simulation errror
OK, can you run mri_glmfit-sim with --debug as the first option and send me the
output?
On 11/11/2021 4:08 PM
@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] permutation simulation errror
What are the contents of
/home/cns_2/Desktop/SC_PF_analysis/qdec/Untitled? Can you send me the
ls of it?
On 11/11/2021 3:38 PM, Brown, Alexander wrote:
External Email - Use Caution
Hi,
Now attached is the mri_glmfit
...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
Sent: Thursday, November 11, 2021 3:05 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] permutation simulation errror
What are the contents of /home/cns_2/Desktop/SC_PF_analysis/qdec/Untitled? Can
you send me the ls of it?
On
behalf of Douglas N. Greve
*Sent:* Thursday, November 11, 2021 2:27 PM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] permutation simulation errror
That is for mri_glmfit, not mri_glmfit-sim.
On 11/11/2021 3:24 PM, Brown, Alexander wrote:
External Email - Use Caution
Contact: 573-884-8779
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
Sent: Thursday, November 11, 2021 2:27 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] permutation simulation errror
That is for mri_glmfit, not
:* Re: [Freesurfer] permutation simulation errror
Can you capture and send the full terminal output from mri_glmfit-sim?
On 11/10/2021 10:41 PM, Brown, Alexander wrote:
External Email - Use Caution
Hi Dr. Greve,
I am using FS 6.0 on Ubuntu 18.04.
Unfortunately, no mri_glmfit-sim log file
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
Sent: Thursday, November 11, 2021 2:04 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] permutation simulation errror
Can you capture and send the full terminal output from mri_glmfit-sim?
On 11/10/2021 10
...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
*Sent:* Wednesday, November 10, 2021 4:40 PM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] permutation simulation errror
WARNING: This message has originated from an External Source. This may
be a phishing expedition that can result in
1416 Carrie Francke Drive
Columbia, MO 65211
Contact: 573-884-8779
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
Sent: Wednesday, November 10, 2021 4:40 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] permutation
Which version of FS are you using? Can you send the log file created by
mri_glmfit-sim (different than the one you sent)?
On 11/10/2021 3:49 PM, Brown, Alexander wrote:
External Email - Use Caution
Hello,
I am attempting to run a permutation simulation to correct for
multiple compar
External Email - Use Caution
Hello,
I am attempting to run a permutation simulation to correct for multiple
comparisons and am getting the following error:
< mri_glmfit-sim --glmdir /home/cns_2/Desktop/SC_PF_analysis/qdec/Untitled
--perm 1000 1.3 neg --perm-resid
ERROR: cannot
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