Re: [Freesurfer] -normalization error

2008-09-24 Thread Bruce Fischl
Hi Jeff, I've seen this happen before with the N3 stuff where it reduces the image intensities so much that you start losing dynamic range. Not sure what causes it, but you could cp orig.mgz to nu.mgz and run from there forward. cheers, Bruce On Wed, 24 Sep 2008, Jeff Sadino wrote: Hello

[Freesurfer] -normalization error

2008-09-24 Thread Jeff Sadino
Hello all, I am receiving an error when trying to run autorecon1. When trying to step through it manually step-by-step, everything is fine up to -nuintensitycor. After running that command and looking at nu.mgz in tkmedit, the picture starts to fade out pretty bad above 120 intensity. When