Hi Yixin
it is pretty hard to parse these screen shots. Maybe you can just upload
your entire subject dir to our ftp site and we can take a look? Did you
do anything special to create the volumetric parcellation, or is it the
standard one created by recon-all (e.g. aparc+aseg.mgz)?
cheers
Bru
thanks guys!
On Fri, Apr 28, 2017 at 4:16 PM, Douglas N Greve
wrote:
> No, you can do it with
>
> mri_binarize --i aparc+aseg.mgz --match ID --o roi.ID.nii.gz
>
> where ID is the parc id from the FreeSurferColorLUT.txt
>
>
> On 04/28/2017 06:58 PM, VA Research wrote:
> > Does freesurfer output i
No, you can do it with
mri_binarize --i aparc+aseg.mgz --match ID --o roi.ID.nii.gz
where ID is the parc id from the FreeSurferColorLUT.txt
On 04/28/2017 06:58 PM, VA Research wrote:
> Does freesurfer output individual roi volume masks for each of the
> cortical parcellations in aparc+aseg?
>
Hi Joseph
you can use mri_binarize or mri_extract_labels to copy them out of the
aparc+aseg into individual volume masks if you want
cheers
Bruce
On Fri, 28 Apr 2017, VA Research wrote:
Does freesurfer output individual roi volume masks for each of the cortical
parcellations in aparc+aseg?
Does freesurfer output individual roi volume masks for each of the
cortical parcellations in aparc+aseg?
thanks
Joseph Veliz
VA Hospital West LA
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