Re: [Freesurfer] /usr/pubsw reference in 7.1.1

2021-07-16 Thread Paul Wighton
External Email - Use Caution I'm not familiar with FLICA, but you should be able to make a symlink for compatibility issues like this. First, backup the original tksurfer: mv $FREESURFER_HOME/bin/tksurfer $FREESURFER_HOME/bin/tksurfer.orig Then: ln -s $FREESURFER_HOME/bin/tksurfe

Re: [Freesurfer] /usr/pubsw reference in 7.1.1

2021-07-15 Thread Drucker, Daniel
I should add - the tksurfer call is from within https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FLICA . Is there an updated version that doesn’t have this issue? On Jul 15, 2021, at 10:20 AM, Drucker, Daniel mailto:ddruc...@mclean.harvard.edu>> wrote: When running tksurfer in 7.1.1 (from https://sur

Re: [Freesurfer] /usr/pubsw reference in 7.1.1

2021-07-15 Thread Douglas N. Greve
*Drucker, Daniel *Sent:* Thursday, July 15, 2021 10:21 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] /usr/pubsw reference in 7.1.1 When running tksurfer in 7.1.1 (from https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/7.1.1/freesurfer-linux-centos7_x86_64-7.1.1.tar.gz <ht

Re: [Freesurfer] /usr/pubsw reference in 7.1.1

2021-07-15 Thread Fischl, Bruce
Hi Daniel Tksurfer has been deprecated for a long time. Have you tried freeview instead? Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Drucker, Daniel Sent: Thursday, July 15, 2021 10:21 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] /usr/pubsw reference

[Freesurfer] /usr/pubsw reference in 7.1.1

2021-07-15 Thread Drucker, Daniel
When running tksurfer in 7.1.1 (from https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/7.1.1/freesurfer-linux-centos7_x86_64-7.1.1.tar.gz ) , I get: Tcl_Init failed: Can't find a usable init.tcl in the following directories: /usr/pubsw/packages/tcltktixblt/current/lib/tcl8.4 This proba