[Freesurfer] segmentation fault with mri_vol2vol or lta_convert

2018-09-13 Thread valabregue
External Email - Use Caution Hello I notice a systematic segmentation fault with several function that use a .lta file (lta_convert or mri_vol2vol) This is due to a too long filename path in the .lta file : If I manually edit the .lta file and change the file_path associate to t

Re: [Freesurfer] New release, v4.4.0 on 64 bit : talairach_afd error

2009-06-17 Thread romain valabregue
, 2009 at 8:37 AM, romain valabregue <mailto:romain.valabre...@chups.jussieu.fr>> wrote: Hello I tried this new relase on 20 subject and I get the same error ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0001, pval=0. < thre

[Freesurfer] New release, v4.4.0 on 64 bit : talairach_afd error

2009-06-16 Thread romain valabregue
Hello I tried this new relase on 20 subject and I get the same error ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0001, pval=0. < threshold=0.0050) Linux pclx16 2.6.23.1-42.fc8 #1 SMP Tue Oct 30 13:18:33 EDT 2007 x86_64 x86_64 x86_64 GNU/Linux but i

Re: [Freesurfer] flat map issue

2007-11-29 Thread romain valabregue
Sorry, here are the jpg in attached romain valabregue a écrit : Hello, The result get even worthier (more contracted) with the option -distances 20 20 here is what I have for the default default and here is what I have the option -distances 20 20 20_20 Thanks for your help Romain

Re: [Freesurfer] flat map issue

2007-11-29 Thread romain valabregue
lh.occip.patch.3d lh.occip.flat.patch.flat On Mon, 26 Nov 2007, romain valabregue wrote: Hello, I define a patch of the occipital lob flat_patch and run the comand mris_flatten lh.occip.patch.3d lh.occip.flat.patch.3d why do I end up with a 'closed' flattened surface flatten result poi

[Freesurfer] flat map issue

2007-11-26 Thread romain valabregue
Hello, I define a patch of the occipital lob and run the comand  mris_flatten  lh.occip.patch.3d lh.occip.flat.patch.3d why do I end up with a 'closed' flattened surface  points around the cutting line stay close and not far away like in classical view like this one : What's wrong

[Freesurfer] analysis.cfg for retinotopy analysis

2007-11-19 Thread romain valabregue
Hello I am trying to analyze retiontopy data using the indication found : http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastIndividualRetinotopyAnalysis I first created the analysis with the comand : mkanalysis-sess -a rtopy -TR 2.8 -designtype retinotopy -paradigm rtopy.par -ncycles But then w