Thanks. But it is still unsuccessfully looking for "rh.cope7.mgh" in
[mydata}/cope7ACroi_rh.osgm.rfx.
There are a lot of .mgh files in there (ar1, beta, mask, rstd, rvar, sar1), and
even more .mgh files in cope7ACroi_rh.osgm.rfx/osgm (cnr, F, gamma, gammavar,
mask, and sig) but no rh.cope7.mgh.
It's:
mri_glmfit --y
/Volumes/Data_Local/ACTWF01_ILD/PrecByLvR_ILD_xsubject/lh.cope$cope.mgh --osgm
--glmdir
/Volumes/Data_Local/ACTWF01_ILD/PrecByLvR_ILD_xsubject/cope$cope\ACroi_lh.osgm.rfx
--surf fsaverage lh --label
/Applications/freesurfer/subjects/fsaverage/label/lh.AC.label
fwhm.dat i
Hi DOug,
doug.log is attached
the bash equivalent for |& is 2>&1 |
thanks,
Susan
On Tue, 3 Nov 2015, Douglas N Greve wrote:
I meant &. The & works for tcsh (or csh). Are you using bash? I'm not
sure what the bash equivalent is. Maybe |2 instead of |&
perhaps some bash experts can weigh in
O
I am using bash. I am trying to google the bash equivalent of tcsh |&, but if
anybody knows it, please let me know.
thanks,
Susan
On Tue, 3 Nov 2015, Douglas N Greve wrote:
> I meant &. The & works for tcsh (or csh). Are you using bash? I'm not
> sure what the bash equivalent is. Maybe |2 inste
Hi Doug,
Do you mean:
mri_glmfit-sim --debug --glmdir
/Volumes/Data_Local/ACTWF01_ILD/PrecByLvR_ILD_xsubject/cope7ACroi_rh.osgm.rfx/osgm
--cache-label AC --grf 4 neg --cwpvalthresh 0.05 --2spaces |7 tee doug.log?
When I tried running the same code with |& tee doug.log at the end, I kept
get
Hi experts,
I am having trouble performing a Monte Carlo correction using mri_glmfit-sim.
My data were sampled to fsaverage and smoothed at fwhm 5, using mris_preproc. I
then ran mri_glmfit on the data.
I want to do my analysis/correction only in auditory cortex (AC) so I did my
own simulation
