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Hi, I have already run recon-all with default options on a large set of
T1-weighted images, using Freesurfer v 6.0. Now we want to extract the
hippocmpal subfields from these already processed images. Apparently our
installation was missing Matlab Co
On Sunday, April 20, 2014 2:25 AM, Bruce Fischl
wrote:
Hi Shahrzad
can you cc the list so that others can answer?
thanks
Bruce
On Sat, 19 Apr 2014, shahrzad kharabian wrote:
> Hi Bruce, True, I am trying to use Freesurfer skullstripping as a first step
> to create an input for
Hi Bruce, True, I am trying to use Freesurfer skullstripping as a first step to
create an input for Brain extraction tool of FSL so as to get in general
acceptable extracted brains without changing BET options a lot for different
brain.
So, what I am doing is as following:
I Deoblique anatomica
On Friday, April 18, 2014 11:43 PM, shahrzad kharabian
wrote:
Dear experts,
I have a encountered an Error while doing skull-stripping using freesurfer on
my T1 weighted images, using mri_watershed
I am using the following command:
mri_watershed -atlas mprage_RPI.mgz
Dear experts,
I have a encountered an Error while doing skull-stripping using freesurfer on
my T1 weighted images, using mri_watershed
I am using the following command:
mri_watershed -atlas mprage_RPI.mgz mprage_skullstrip.mgz
and here is the error:
mri_watershed Error:
w=White Matter =Inte
