[Freesurfer] trouble with tracula preprocessing step

2012-12-17 Thread s0675204
e is however a dwi.nii.gz file present Can you help me understand what happened here? Has something gone wrong? How can I fix it? Thank you so much for your help! best wishes, Prerona On 17 December 2012 12:48, s0675204 wrote: > Hello > > I have been running trac-paths, and thought it

Re: [Freesurfer] clarifications about running bedpost instead of tracl-all step 2

2012-12-17 Thread s0675204
>>> >>> >>> 1) Can't hurt to delete. >>> 2) Yes. >>> 3) Yes. >>> >>> >>> On Wed, 12 Dec 2012, s0675204 wrote: >>> >>>> Hello, >>>> >>>> thank you for your help with the firs

[Freesurfer] clarifications about running bedpost instead of tracl-all step 2

2012-12-12 Thread s0675204
particular > subject? Then it applies to that subject. > > > On Mon, 10 Dec 2012, s0675204 wrote: > >> Hello >> >> My trac- preproc has completed. However, I am confused about the >> status message. It says: >> >> #-

Re: [Freesurfer] Fwd: Running Tracula: trac-preproc exited with ERRORS

2012-12-11 Thread s0675204
Thank you so much! All (?) makes sense now that I am looking at the log files. It has actually only processed 6 (out of 102). Now I am trying to figure out why it skipped the ones it did best wishes, Prerona On 10 December 2012 20:33, s0675204 wrote: > okay. i will look through the logs

Re: [Freesurfer] Fwd: Running Tracula: trac-preproc exited with ERRORS

2012-12-10 Thread s0675204
bvalfile that are used for all subjects. > > > On Sat, 8 Dec 2012, s0675204 wrote: > >> the values are the same but each subject has an individual bvec & bval >> file. so it depends on how the script will read it? >> >> On 8 December 2012 00:03, Anastasia Y

Re: [Freesurfer] Running Tracula: trac-preproc exited with ERRORS

2012-12-07 Thread s0675204
.44614082574844 -0.84422290325164 -0.81589156389236 -0.56895911693573 -0.02196817658841 0.51983833312988 0.83259600400924 0.99861049652099 0.85606354475021 0.36184993386268 On 7 December 2012 14:08, Anastasia Yendiki wrote: > > Great, I love easy problems :) > > > On Fri, 7 Dec 2012, s0675204 wrote:

[Freesurfer] Running Tracula: trac-preproc exited with ERRORS

2012-12-07 Thread s0675204
Hello I am trying to run Tracula on a set of dicoms files. I have run recon-all previously. I am getting a message trac-preproc exited with ERRORS Please can anyone advise me on this? I have listed all the details (command, error/output, config file) below Thank you so much for your help best w