[Freesurfer] Buckner Data

2006-04-07 Thread rhaynes
Will the Buckner data set be reprocessed with version 3.0? If it already has been, where can we get it? I can't find it in the v3.0 release. Thanks. Ryan Haynes Children's Healthcare of Atlanta ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] Determining r and p values from GLM

2006-02-10 Thread rhaynes
In Figure 4 of your recent paper "Thickness of ventromedial prefrontal cortex in humans...", the graphs display r and p values which are defined at a "peak vertex" in the paper. In tksurfer, if you compute statistics over a defined ROI you get similar graphs, but how do you find the peak vertex i

[Freesurfer] Rotating Images in Analyze

2005-07-01 Thread rhaynes
We are trying to rotate images in Analyze to align the midline. We have to do this by getting series from a PAX system to a PC with Analyze, rotating the images, sending back to PAX, and then transfering to a linux box with FreeSurfer. For some reason, FreeSurfer loads only a thin slice from the se