Check ulimit -m
That's the max mem per process.
ulimit -m 0
Maybe will help.
-- Pedro Paulo Jr
E71 Nokia
-Msg original-
De: Jürgen Hänggi
Enviada: 01/07/2009 02:36:36
Para: Freesurfer Mailinglist
Assunto: [Freesurfer] Cannot allocate memory / can't allocate region
Dear FS experts
Zhang
In the wiki page there's a feature to check the previous version of each page.
-- Pedro Paulo Jr
E71 Nokia
-Msg original-
De: Bruce Fischl
Enviada: 29/06/2009 17:30:10
Para: Zhang, Xiaochu (NIH/NIDA) [F]
Cc: 'freesurfer@nmr.mgh.harvard.edu'
Assunto: Re: [Freesurfer] Where can I
To make analysis of volumetric data export volumetric data to csv and use your
statistical package.
-- Pedro Paulo Jr
E71 Nokia
-Msg original-
De: Anita di Iasio
Enviada: 25/06/2009 06:04:38
Para: freesurfer@nmr.mgh.harvard.edu
Assunto: [Freesurfer] volume group analysis
Hi all,
I h
Jose.
1) Yes. You should run -qcache
2) Yes. This file is used to describe your experiment. You can have more
details in the FreeSurfer tutorial for group analysis.
PPJ
-- Pedro Paulo Jr
E71 Nokia
-Msg original-
De: Jose Soares
Enviada: 15/06/2009 06:38:02
Para: freesurfer
Aseg.stat
Sent from my Nokia phone @E71
-Original Message-
From: Gabriel Go.Es.
Sent: 30/03/2009 07:14:32
Subject: [Freesurfer] GM
hello
I want to use GM volume stats, i don't know whether it is or not, where?
I had understood that FS does not calculate the total GM volume, how c
Did you check aseg.stat
Sent from my Nokia phone @E71
-Original Message-
From: Kelly Silva
Sent: 30/03/2009 05:46:36
To: Bruce Fischl
Cc: freesurfer
Subject: Res: [Freesurfer] Doubt about GM
Hello,
Thank you for your answer, Bruce. I am looking for the colheader that brings
the tota
I think Bruce or Douglas can explain better.
However, the reason for both hemispheres being separated is that you need to
mantain an S2 topological space.
Sent from my Nokia phone @E71
-Original Message-
From: s...@nmr.mgh.harvard.edu
Sent: 19/03/2009 19:07:48
Subject: [Freesurfer] m
We still have four places.
Sent from my Nokia phone
-Original Message-
From: Nick Schmansky
Sent: 17/02/2009 18:36:08
To: Sam Torrisi
Cc: Freesurfer Mailing List
Subject: Re: [Freesurfer] brazil course
Sam,
Pedro Paulo de M. Oliveira's email is:
ppj at netfilter.com.br
The ori
Hi,
That's good.
Quotes from the site below. Maybe creating a VO for FreeSurfer users is an
idea.
Best Regards,
PPJ
""I want to use OSG resources."
OSG does not currently support individual researchers. Rather, users of the
OSG are required to band together into Virtua
In the attached figure:
The numbers (-28.25, -12.73, -0.57) refer to fsaverage. How can I export
the Thickness values of the subjects for this cordinates?
The numbers (-28.25, -12.73, -0.57) are in Talairach space?
Thanks,
PPJ<>___
Freesurfer m
1) Two procedures:
a) set the variables: FREESURFER_HOME and FSFAST_HOME
b) Paste these lines in Octave:
fshome = getenv('FREESURFER_HOME');
fsmatlab = sprintf('%s/matlab',fshome);
path(path,fsmatlab);
clear fshome fsmatlab;
fsfasthome = getenv('FSFAST_HOME');
fsfasttoolbox = sprintf('%s/toolbox',f
Hi,
FreeSurfer rendering under VNC is very slow and sometimes not possible. You
may try UltraVNC (freeware - worked with me once) that has a better OpenGL
support.
I strongly recommend that you install a local copy of FreeSurfer and use it
to visualize the data.
Best Regards,
Pedro Paulo Olivei
Hi,
I would like to ask if there's already a benchmark performance of V4
compared to V3. In my environment V3 run a full recon-all in 21 hours full
brain. How long I should expect the running time of V4 if I install it?
Thanks,
Pedro Paulo Oliveira Jr.
___
ckness larger than 5mm and the truncation makes
the statistical calculation fault in some aspects of my work. It would be
possible to have a "raw thickness" calculation?
Tks again
PPJ
___
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