[Freesurfer] SynthSR for T2-weighted images

2024-01-04 Thread hmarz...@student.ubc.ca
External Email - Use Caution Hello Eugenio, I wanted to inquire whether you have plans to create a tool for synthesizing T2-weighted low-field MRI images similar to SynthSR, which was developed for T1-weighted images. I'm in need of synthesizing T2-weighted images for Hyperfine

Re: [Freesurfer] Freesurfer version and Installation

2023-08-08 Thread hmarz...@student.ubc.ca
...@nmr.mgh.harvard.edu on behalf of hmarz...@student.ubc.ca Sent: Monday, July 31, 2023 11:38:48 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Freesurfer version and Installation [CAUTION: Non-UBC Email] External Email - Use Caution Dear Freesurfer developers, Previously

[Freesurfer] Freesurfer version and Installation

2023-07-31 Thread hmarz...@student.ubc.ca
External Email - Use Caution Dear Freesurfer developers, Previously, I downloaded the freesurfer-linux-centos7_x86_64-dev-20230331-e304091 version and successfully analyzed some data using this version. Now, I find myself in the need to reinstall Freesurfer, but I am unable to

Re: [Freesurfer] Issue with running recon-all

2023-05-24 Thread hmarz...@student.ubc.ca
until the list moderator can review it for approval. The reason it is being held: Message body is too big: 22531815 bytes with a limit of 1 KB Regards Hengameh ____ From: hmarz...@student.ubc.ca Sent: Tuesday, May 23, 2023 2:07:10 PM To: Freesurfer support li

Re: [Freesurfer] Issue with running recon-all

2023-05-23 Thread hmarz...@student.ubc.ca
this is running out of disk space. Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of hmarz...@student.ubc.ca Sent: Monday, May 15, 2023 1:02 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Issue with running recon-all External Email - Use Caution Dear

[Freesurfer] Issue with running recon-all

2023-05-15 Thread hmarz...@student.ubc.ca
External Email - Use Caution Dear developers, I am writing to report an issue I encountered while running recon-all on some subjects. Specifically, I received an error message stating "error: freadFloat: fread failed" for several of the subjects. Starting surface-based mapping

[Freesurfer] Issue with running recon-all on Synthsr output

2023-04-03 Thread hmarz...@student.ubc.ca
External Email - Use Caution Dear developers, I recently ran Synthsr on one of my images and now I am attempting to run recon-all. The output states that it finished without any errors in just 0.006 hours, but I am unable to proceed with the processing. Have any of you encount

[Freesurfer] error with synthsr in Mac M1

2023-03-29 Thread hmarz...@student.ubc.ca
External Email - Use Caution Hi developers, I'm Using freesurfer-darwin-macOS-dev.pkg (the ) which is developed in march 2023. Also my system is Apple M1 max (MacOS Ventura 13.2.1). When I run synthsr, I receive an error: mri_synthsr --i /Users/Hyperfine/028 --o /Users/Hyperf