[Freesurfer] TRACULA Adding a new tract to the finished analysis

Dear Anastasia and Tracula users, I ran the longitudinal pipeline of Tracula with my subjects and I finished without error. However, I just realized now that I only added cingulum gyrus ending but not the angular bundle. I am interested in tracts that passes through hippocampus so angular bundle s

[Freesurfer] TRACULA NaN values in stats files and empty stats file

Dear Tracula users, I reconstructed uncinate fasciculus using the latest version of Freesurfer and Tracula. However, there seems to be a problem with produced stats files ​ in dpath folder​ . I have -nan values for the center_avg variables in the file "pathstats.overall.txt" ​ and there is no ent

[Freesurfer] TRACULA bedpostx error

Hello, I am running TRACULA on one subject, I ran trac-all -prep without problem. However, when I run trac-all -bedp, it is not successfully completed. Although it says, all slices processed, it gives the error: bedpostx_mgh: line 345: kill: (18735) - No such process I am missing many outputs suc

[Freesurfer] Tracula bedpostx terminated

Dear Freesurfer experts, I am running tracula v5.3.0 on OpenSuse. I successfully ra ​​ n freesurfer ​ ​ reconstruction ​ ​ and trac-all-prep. However, when I try to run trac-all -bedp -c ​ ​ dmrirc_file, I get the following ​message: ​​ 47 s​ lices processed 48 ​ s​ lices processed ​50​ s​ li

Re: [Freesurfer] TRACULA preprocessing error

be great! > > Thanks, > > Doug > > Douglas Merkitch > Neurological Sciences > Rush University Medical Center > Email: douglas_merki...@rush.edu > > > > > > On Nov 9, 2015, at 6:39 AM, denizzgursel > wrote: > > Dear all, > > I am running

[Freesurfer] TRACULA preprocessing error

Dear all, I am running Tracula preprocessing on NIFTI files. After running the command: trac-all -prep -c I get the error: ... processing /data_august/Deniz/freesurfer/traculaoutput/DTI_con_AbSa90/dmri/dwi_tmp0032 mv -f /data_august/Deniz/freesurfer/traculaoutput/DTI_con_AbSa90/dmri/bvecs /data_a

[Freesurfer] Tracula ends with errors

Dear all, I am very new to using TRACULA and Freesurfer. I am trying to apply tracula on the provided tutorial data. When I ran the command trac-all -prep -c dmrirc.tutorial, after eddy current correction, I get this error: mv -f /data_august/Deniz/tutorial/tutorial_data/diffusion_tutorial//elmo.

[Freesurfer] (no subject)

Dear all, I am very new to using TRACULA and Freesurfer. I am trying to apply tracula on the provided tutorial data. When I ran the command trac-all -prep -c dmrirc.tutorial, after eddy current correction, I get this error: -- D. ___ Freesurfer mailing