[Freesurfer] PostDoc Position at UCL Institute of Neurology - London (UK)

2009-08-07 Thread Dr. Claudia Wheeler-Kingshott
urology, 23 Queen Square, London WC1N 3BG (tel: 020 7676 2191; fax: 020 7278 5069; email: person...@ion.ucl.ac.uk <mailto:person...@ion.ucl.ac.uk>). Closing date for applications: 7 September 2009. Further information can be obtained from Dr. Claudia Wheeler-Kingshott (email:

Re: [Freesurfer] Overlay significant regions

2009-05-01 Thread Dr. Claudia Wheeler-Kingshott
tomical regions, both cortical (e.g. precentral gyrus) and non-cortical (e.g. putamen). You can extract them and create individual volumes if you want. cheers, Bruce On Fri, 1 May 2009, Dr. Claudia Wheeler-Kingshott wrote: Hi, We have done our region of interest statistical analysis in Stata an

[Freesurfer] Overlay significant regions

2009-05-01 Thread Dr. Claudia Wheeler-Kingshott
ROI defined in the atlas, so that we can overlay only some of the regions? best wishes Claudia -- - Claudia Wheeler-Kingshott, PhD Senior Lecturer in Magnetic Resonance Physics Department of Neuroinflammation Institute of Neurology, UCL Queen Square London

Re: [Freesurfer] Talairach transformations in tkmedit and tkregister2

2007-10-17 Thread Dr. Claudia Wheeler-Kingshott
7, Dr. Claudia Wheeler-Kingshott wrote: Hi, We have a problem with the Talairach transformations. When we load the talairach.mgz file using tkmedit the axial and coronal orientations are swapped and displaced in the window. The puzzling thing is that if we use tkregister2, the registration is

[Freesurfer] Talairach transformations in tkmedit and tkregister2

2007-10-16 Thread Dr. Claudia Wheeler-Kingshott
previous message that had a similar problem but using both the tkmedit and tkregister2. Can we assume that in our case it is all fine, given that tkregister2 seems to be OK? Claudia -- - Claudia Wheeler-Kingshott, PhD Senior Lecturer Department of

[Freesurfer] processing steps

2006-09-25 Thread claudia wheeler-kingshott
Hi,   I have just started to look at freesurfer and decided to run each step to try to understand what recon-all does.   Well, after a bit of teething to put the data in the right orientation, we managed to start, but we have a few questions :-)   First of all, our SPGR data is 1.2x1.2x1.2mm^