[Freesurfer] Efficient printing of freeview screenshots through freeview [HPC]

nal.txt" #> Coronal view slices (changes in Y-coordinate) for ((i = 0; i <= STEPS; i++)); do slice=$(bc <<< "$CORONAL_START + ($CORONAL_END - $CORONAL_START) * $i / $STEPS") echo "-viewport coronal -slice 127 $slice 127 -viewsize 800 800 -ss

[Freesurfer] Freesurfer on a high-performance cluster (HPC) - MATLAB runtime

us module without it? Any experience with the hpc is helpful! With gratitude, Camilo ---- *Camilo Castelblanco Riveros (He/His)* Integrative Neuroscience at Dartmouth (IND) Ph.D. Student Robertson Lab <

Re: [Freesurfer] recon-all tutorial data

Hi Gabriel, I am not sure if this is precisely the sample data you are looking for, but I found something that resembles a sample data set at /autofs/cluster/freesurfer/subjects --Camilo On May 18, 2011, at 10:11 PM, obre...@nmr.mgh.harvard.edu wrote: > Hi, > > I'm new to the so

[Freesurfer] visualizing surfaces

Hi Freesurfer, Is there a way to visualize 3 surfaces at the same time. I am trying to visualize the BEMs in my flash directory. So far, I can only load 2 of them by loading the main surface and the axiliar surface. Thanks, Camilo ___ Freesurfer

[Freesurfer] BEMs

flash 5 synthesized sequence, but is this the same case for the watershed? Any comments and advice are strongly appreciated. Thanks, Camilo ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo

[Freesurfer] Converting .dcm to COR files

urget/control_01/mri/orig/003DCM/COR-.info I am running the standar enviroment in the nmr, and the location of my files is: /autofs/space/rao_001/users/patrickp/eeg_propofol/control_01/... bourget/control_01/mri/orig Can someone give me some advise in this issue? Thanks, C

[Freesurfer] load_mgh question

nks, Camilo ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] Question about format conversion

Hi Freesurfer Help, I am trying to get the wm.mgz file into matlab. Is there a way to change the mgz into dicom format, or any othe matlab compatible formats? Thanks, Camilo ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https

[Freesurfer] skull striping issue

#x27;t use watershed analyze", but agian it did not work. Is there anythig else I can do? Thanks, Camilo ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] midbrain question

Hi everyone, I was just wondering if any of you knew if the midbrain is supposed to show up on the white matter filled images. Thanks, Camilo ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] Freesurfer and brainstem

pons and callosum points). Even I do that, I still get the brainstem on the reconstructions. Does any one have any idea on how to solve this inconvenient? Thanks, Camilo ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu

[Freesurfer] Motion registration

256 uchar /tmp/reg.res+orig.BRIK 002MC mri_convert: unknown flag "-raw" type mri_convert -u for usage Does anyone have any idea why this is happening? Thanks, Camilo ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh